Useful Databases

We provide several useful databases to download!


HMDB Metabolites
A total of 110,000 metabolites with basic information (Mass, formula, class, SMILES, pathway, concentrations in various samples, IDs and links in various databases, etc.) in the Human Metabolome Database (HMDB,www.hmdb.ca).
KEGG Metabolites And Pathways
A total of 6150 metabolites and 433 pathways in the database of Kyoto Encyclopedia of Genes and Genomes (KEGG, www.kegg.jp).
SMPDB Metabolites And Pathways
The 48687 pathways with basic information (names and IDs of metabolites, IUPAC, InChI, InChI Key, etc.) in the Small Molecule Pathway Database (SMPDB,www.smpdb.ca).
SMPDB Pathway Descriptions
The descriptions of 48703 pathways in the Small Molecule Pathway Database (SMPDB, www.smpdb.ca).
Metabolite Distance Matrix
A 4206*4206 matrix of metabolite-metabolite distance (based on shortest KEGG reaction steps between two metabolites).
Microbial ko-ec-Pathway Links
A total of 1048576 microbial ko-ec-pathway links in the database of Kyoto Encyclopedia of Genes and Genomes (KEGG, www.kegg.jp).
Metabolite-Microbe-Pathway Links
A total of 16828 metabolite-microbe-pathway links in the database of Kyoto Encyclopedia of Genes and Genomes (KEGG,www.kegg.jp).

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